SetupX study design database for metabolomic projects SOP Repository   SetupX contains a number of Standard Operation Procedures / Protocols. Some of them are publicly available.   data content    Compounds tyrosine   phenylalanine   glycerol-alpha-phosphate   succinic acid   palmitic acid   stearic acid   glycine   inositol myo-   pelargonic acid   lysine  ...    59 Species in SetupX Homo sapiens   Arabidopsis thaliana   Chlamydomonas reinhardtii   Vitis vinifera   Mus sp.   Citrus sinensis   Zea mays   Saccharophagus degradans   Glycine max   Mus musculus   Malus x domestica   Rattus norvegicus   Nicotiana tabacum   Vitis sp.   Bos taurus   Pinus taeda   Halobacterium salinarum   Beta vulgaris subsp. vulgaris   Lycopersicon esculentum   Lactuca sativa  ...    organs / parts eye, ground lyophilized, trichom, blood plasma, breath condensate, 324, adult leaf, brain, berry, none, leaf, corn kernel, ovarian borderline, heart muscle, root tips, nt mothers, infant heart, foliar, code14, --, mesocarp, amniotic fluids/, sepal, gastrocnemius muscle, colon carcinoma, tuber, rosette, germinating seedling, epidermis, penis, ... content number of samples added to SetupX per month news from the SetupX-DevBlog Query Search species all species species,  compound,  factor,  title,  sample,  all Welcome to SetupX What is in SetupX? SetupX is a system that enables investigators to detail and set up a biological experiment. Right now it contains the following samples: Who may submit experiments? You. The front end is intuitive so it should be easy for you to enter your own study design in SetupX. For collaborations with the Fiehn laboratory, consent on research strategies and cost-sharing is necessary between the principal investigators. "I want to keep my data for myself!" Your data are safe and are not automatically available to the public. However, we request that data become publicly available when results are published in peer-reviewed scientific journals. If you consent, data may be shared with other databases, e.g. by request of regulatory or funding agencies. Share your Experiment! SetupX is part of ongoing efforts to standardize reporting requirements for metabolomic experiments, developed by the MSI. Check out the existing public experiments . Automated Anotation Annotation of GC-TOF mass spectral data is performed by the linked BinBase database. Experiments are scheduled for annotation from the SetupX interface, and BinBase exports finished results again to SetupX for user downloads. Get started! To get started we will provide you with an account. Please enter your user information in the box on the right hand side, and we will get in contact with you as soon as possible. Support If you have any questions, we are happy to help you. We continuously improve SetupX to match study designs and to include query functions. We rely on your feedback! Public Data A subset of 1980 out of the 19032 samples related to 279 experiments is publicly available - including the whole experimental design and the annotated GC-TOF result data. Use the link below to query the whole sytem for the samples that you are interessted in. Existing Users Please enter your userID & password. In case you no not remember, please contact us. login: password: New Users* To create a new user account please enter a few informations about yourself and you will receive your personal account by email. name organisation eMail * Accounts are only needed for active collaborators who submit samples for data acquisition to either the UCD metabolomics core laboratory or the UCD Fiehn metabolomics research laboratory. Software Download SetupX Download SetupX for use in your personal lab enviroment. It is an open source project so feel free to download it and try it out.. Run SetupX orbiter Click here to run the SetupX orbiter. A tiny application printing tags with a dymo printer to be placed right on the vials..